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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29361100_29364407_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29361100 - 29364407
Intron Length:
3308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTTATT
Flanking Amino Acid:
YDSDIWEKMLKEKMGSNLLI
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.3
0.75
0.8
77.4
35.5
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
58.5
0.35
2
82.3
38.6

Associated Gene:

Gene:
PNPLA8
Ensembl Gene ID:
ENSAPLG00000017737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036392
29350131 - 29385171
35041