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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29364466_29366782_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29364466 - 29366782
Intron Length:
2317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGACTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTAATATAACT
Flanking Amino Acid:
ETARNSKCPKVAAVSTIVNR
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
80.9
33.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
67.3
0.39
0.9
58.5
38.1
Minor 5ss
34.9
-1.7
2.8
43.6
43.5
Minor BPS
53.4
0.19
1.8
75.89
40

Associated Gene:

Gene:
PNPLA8
Ensembl Gene ID:
ENSAPLG00000017737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036392
29350131 - 29385171
35041