Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29384552_29384896_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29384552 - 29384896

Intron Length:

345

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

GTTTTAAATACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTGTTTTAAAT

Flanking Amino Acid:

NVISSATDTEEVHTMLDALL

Intron Amino Acid Position:

714

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

1.1

80.8

31.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

73.9

0.54

67.3

Minor 5ss

33.6

-1.9

3.1

44.2

43.6

Minor BPS

0.67

1.5

84.29

36.6

Associated Gene:

Gene:

PNPLA8

Ensembl Gene ID:

ENSAPLG00000017737

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036392

29350131 - 29385171

35041