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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29493328_29493658_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29493328 - 29493658
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GATAGTTGAAAT
Flanking Amino Acid:
PPPIIFWMDNAFQRLPQSER
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
80.1
28.4
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
85.9
0.81
0.7
84.9
29.9
Minor 5ss
39.5
-1.2
2.9
49.4
41.4
Minor BPS
45
-0.3
1.9
61.21
41.8

Associated Gene:

Gene:
NRCAM
Ensembl Gene ID:
ENSAPLG00000008656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009199
29492458 - 29550623
58166