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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29494361_29496370_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29494361 - 29496370
Intron Length:
2010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGAAATTAATT
Flanking Amino Acid:
ANLSDTDIYGAKPVTERPPI
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.8
0.85
0.8
80.5
37
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
55.3
0.24
1.8
75.17
41.3

Associated Gene:

Gene:
NRCAM
Ensembl Gene ID:
ENSAPLG00000008656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009199
29492458 - 29550623
58166