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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29496483_29498375_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29496483 - 29498375
Intron Length:
1893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTTAC
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TGATCTGTACTT
Flanking Amino Acid:
VLLLECIAAGLPTPVIRWIK
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
69.2
31
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
88.4
0.86
0.8
80.8
36.8
Minor 5ss
37.6
-1.4
2.9
49.4
41.4
Minor BPS
47.6
-0.1
2.2
68.89
42.7

Associated Gene:

Gene:
NRCAM
Ensembl Gene ID:
ENSAPLG00000008656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009199
29492458 - 29550623
58166