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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29498561_29499676_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29498561 - 29499676
Intron Length:
1116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTAACCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TCTTCCTAACCC
Flanking Amino Acid:
THHVISVTVKAAPYWITAPR
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.6
37
Major BPS
68
0.45
1
57.8
39
Major PPT
71.8
0.49
0.9
63.1
37.3
Minor 5ss
35.6
-1.6
3.2
48.3
47.2
Minor BPS
60.5
0.31
2
73.88
43.5

Associated Gene:

Gene:
NRCAM
Ensembl Gene ID:
ENSAPLG00000008656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009199
29492458 - 29550623
58166