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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29499809_29509178_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29499809 - 29509178
Intron Length:
9370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTATACCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCTTTCATT
Flanking Amino Acid:
SWLSNGVPIAIAPEDPSRKV
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.4
26.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
67
0.38
1
60.5
39.9
Minor 5ss
45.6
-0.5
3.1
65.7
39.5
Minor BPS
67.1
0.62
1.7
82.98
39.3

Associated Gene:

Gene:
NRCAM
Ensembl Gene ID:
ENSAPLG00000008656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009199
29492458 - 29550623
58166