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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29509323_29510424_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29509323 - 29510424
Intron Length:
1102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTATCTATATCC
Flanking Amino Acid:
LLANAFVNVLAEPPRILTPA
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
35.1
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
33.3
-1.9
2.9
35.7
40.8
Minor BPS
50.7
0
1.9
65.1
40.1

Associated Gene:

Gene:
NRCAM
Ensembl Gene ID:
ENSAPLG00000008656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009199
29492458 - 29550623
58166