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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29511017_29511099_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29511017 - 29511099
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAATTTTAAATT
Flanking Amino Acid:
IQNEVQLEVKDPTLIIKQPE
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.9
79.2
38
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
58.7
0.35
1.6
73.01
38.5

Associated Gene:

Gene:
NRCAM
Ensembl Gene ID:
ENSAPLG00000008656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009199
29492458 - 29550623
58166