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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29511912_29514174_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29511912 - 29514174
Intron Length:
2263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
GTTCATTTGATT
Flanking Amino Acid:
VSASAVLTVVARPNPPFDLE
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
80.8
0.69
0.9
73.5
40.4
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
57.5
0.32
1.5
74.21
36.4

Associated Gene:

Gene:
NRCAM
Ensembl Gene ID:
ENSAPLG00000008656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009199
29492458 - 29550623
58166