About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29514277_29516027_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29514277 - 29516027
Intron Length:
1751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTTG
5'SS Class:
major
3'SS Sequence:
TTCCTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGACATAAAA
Flanking Amino Acid:
PGDENNSPITSFVIEYEDGL
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
74.2
37
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
85
0.79
0.8
79.8
32.1
Minor 5ss
55.7
0.19
2.3
66.6
38.8
Minor BPS
50.7
0.02
2
70.96
40.5

Associated Gene:

Gene:
NRCAM
Ensembl Gene ID:
ENSAPLG00000008656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009199
29492458 - 29550623
58166