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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29517535_29517844_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29517535 - 29517844
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTCCTCACA
Flanking Amino Acid:
SEVIGHSGEDLPMVAPGNVQ
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
75.6
35.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
88.9
0.88
0.6
84.3
23.7
Minor 5ss
47.7
-0.2
2.8
71.6
38.3
Minor BPS
59.6
0.3
2.1
79.54
36.7

Associated Gene:

Gene:
NRCAM
Ensembl Gene ID:
ENSAPLG00000008656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009199
29492458 - 29550623
58166