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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29521885_29522084_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29521885 - 29522084
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTCTTCTTAAAA
Flanking Amino Acid:
PDKVFKTPEGVPSSPSFLKI
Intron Amino Acid Position:
845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
72.3
0.5
1.1
75.4
32
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
75.3
0.79
1.3
80.08
35.8

Associated Gene:

Gene:
NRCAM
Ensembl Gene ID:
ENSAPLG00000008656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009199
29492458 - 29550623
58166