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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29538173_29540700_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29538173 - 29540700
Intron Length:
2528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAT
5'SS Class:
strong_major
3'SS Sequence:
TCAAATATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ACTATTTCAAAT
Flanking Amino Acid:
IRRNKGGKYPVKEKEDAHAD
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.4
29.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
66.8
0.38
1
63.2
42.3
Minor 5ss
45.7
-0.5
2.9
64.3
47.2
Minor BPS
48.6
-0
1.6
64.1
40.3

Associated Gene:

Gene:
NRCAM
Ensembl Gene ID:
ENSAPLG00000008656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009199
29492458 - 29550623
58166