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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29540780_29550385_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29540780 - 29550385
Intron Length:
9606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CATCAGTTAATT
Flanking Amino Acid:
KEDDGTFGEYSDAEDHKPLK
Intron Amino Acid Position:
1015

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82.3
0.73
0.9
73.6
41.8
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
48
-0
2.2
67.54
43.2

Associated Gene:

Gene:
NRCAM
Ensembl Gene ID:
ENSAPLG00000008656
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009199
29492458 - 29550623
58166