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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29585586_29659546_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
29585586 - 29659546
Intron Length:
73961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCAATCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
CTTTCTTCAATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.7
32.2
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
71.2
0.48
0.8
63.3
37.1
Minor 5ss
35.2
-1.7
3.5
49.1
47.1
Minor BPS
67.1
0.52
1.5
74.09
37.4

Associated Gene:

Gene:
CNTN1
Ensembl Gene ID:
ENSAPLG00000010381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043731
29584749 - 29831590
246842