Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29659591_29741854_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

29659591 - 29741854

Intron Length:

82264

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGGTGGG

5'SS Class:

major

3'SS Sequence:

TCTCTCTCATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCCTTTTTATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.5

1.2

59.2

45.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

78.7

0.65

0.8

78.2

Minor 5ss

27.1

-2.6

3.1

32.2

42.4

Minor BPS

57.4

0.31

1.6

70.13

42.3

Associated Gene:

Gene:

CNTN1

Ensembl Gene ID:

ENSAPLG00000010381

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045009

29587053 - 29831590

244538

ENSAPLT00000043731

29584749 - 29831590

246842

ENSAPLT00000017573

29654385 - 29831590

177206