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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29741997_29758235_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29741997 - 29758235
Intron Length:
16239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AAGTGATTAACT
Flanking Amino Acid:
FIFCESGHLHEEGNKGYGPV
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.1
38.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
79.3
0.66
0.8
77.3
36.4
Minor 5ss
37.8
-1.4
3.1
48.2
47.4
Minor BPS
54.6
0.22
2
72.97
43.4

Associated Gene:

Gene:
CNTN1
Ensembl Gene ID:
ENSAPLG00000010381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010916
29659547 - 29831590
172044
ENSAPLT00000045009
29587053 - 29831590
244538
ENSAPLT00000043731
29584749 - 29831590
246842
ENSAPLT00000017573
29654385 - 29831590
177206