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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29758366_29761033_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29758366 - 29761033
Intron Length:
2668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCGCT
5'SS Class:
major
3'SS Sequence:
TCTTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
TCTTTTTTAATA
Flanking Amino Acid:
RARAIPFPTYRWKLNNWDID
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
71.6
38.4
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
82.8
0.74
0.8
81
29.6
Minor 5ss
39
-1.2
3.4
57.2
47
Minor BPS
76
0.81
1.1
78
33.3

Associated Gene:

Gene:
CNTN1
Ensembl Gene ID:
ENSAPLG00000010381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010916
29659547 - 29831590
172044
ENSAPLT00000045009
29587053 - 29831590
244538
ENSAPLT00000043731
29584749 - 29831590
246842
ENSAPLT00000017573
29654385 - 29831590
177206