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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29767875_29768028_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29767875 - 29768028
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTACCTTTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTGTACTTTACT
Flanking Amino Acid:
NVTLECFALGNPVPELRWSK
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
66.6
0.37
1.1
63.8
41.7
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
66.8
0.61
1.9
85.35
40.8

Associated Gene:

Gene:
CNTN1
Ensembl Gene ID:
ENSAPLG00000010381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017573
29654385 - 29831590
177206
ENSAPLT00000010916
29659547 - 29831590
172044
ENSAPLT00000045009
29587053 - 29831590
244538
ENSAPLT00000043731
29584749 - 29831590
246842