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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29769542_29771511_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29769542 - 29771511
Intron Length:
1970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTTTTATTGATT
Flanking Amino Acid:
TIRWLKNGASFRKGELRIQS
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
87.5
28.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.5
0.64
0.9
76.8
37.4
Minor 5ss
39.8
-1.1
2.8
52.2
44.4
Minor BPS
63.3
0.5
1.6
80.48
35.1

Associated Gene:

Gene:
CNTN1
Ensembl Gene ID:
ENSAPLG00000010381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043731
29584749 - 29831590
246842
ENSAPLT00000017573
29654385 - 29831590
177206
ENSAPLT00000010916
29659547 - 29831590
172044
ENSAPLT00000045009
29587053 - 29831590
244538