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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29771630_29773226_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29771630 - 29773226
Intron Length:
1597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTCAGTGAG
5'SS Class:
major
3'SS Sequence:
TTTTTGCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTGTGTTAATT
Flanking Amino Acid:
IYANAELKIVASPPTFELNP
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.3
63.6
42.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
27.9
-2.5
3
32.8
41.9
Minor BPS
53.4
0.19
2.2
74.4
43.5

Associated Gene:

Gene:
CNTN1
Ensembl Gene ID:
ENSAPLG00000010381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045009
29587053 - 29831590
244538
ENSAPLT00000043731
29584749 - 29831590
246842
ENSAPLT00000017573
29654385 - 29831590
177206
ENSAPLT00000010916
29659547 - 29831590
172044