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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29773378_29773889_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29773378 - 29773889
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTTAGTATC
5'SS Class:
major
3'SS Sequence:
AAACTTTCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
CTTGCTGTAATT
Flanking Amino Acid:
KGTELLVNGSRIHIWDDGSL
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
77.7
37.1
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
60.8
0.24
1
55.8
39
Minor 5ss
37.1
-1.5
2.7
48.7
40
Minor BPS
53.3
0.18
2.1
74.65
43.4

Associated Gene:

Gene:
CNTN1
Ensembl Gene ID:
ENSAPLG00000010381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045009
29587053 - 29831590
244538
ENSAPLT00000043731
29584749 - 29831590
246842
ENSAPLT00000017573
29654385 - 29831590
177206
ENSAPLT00000010916
29659547 - 29831590
172044