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Intron Name: Anas_platyrhynchos_platyrhynchos_1_29777739_29789924_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29777739 - 29789924

Intron Length:

12186

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGATAC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTTTAACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCATTAA

U12 Branch Point Sequence:

TGTTTTTTAACA

Flanking Amino Acid:

EHEHYERNVMIKSNGELLIK

Intron Amino Acid Position:

551

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

73.9

30.8

Major BPS

0.32

1.1

54.3

41.1

Major PPT

84.1

0.77

0.9

35.4

Minor 5ss

38.4

-1.3

3.1

47.6

42.6

Minor BPS

80.4

0.95

83.49

30.3

Associated Gene:

Gene:

CNTN1

Ensembl Gene ID:

ENSAPLG00000010381

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045009

29587053 - 29831590

244538

ENSAPLT00000043731

29584749 - 29831590

246842

ENSAPLT00000017573

29654385 - 29831590

177206

ENSAPLT00000010916

29659547 - 29831590

172044