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Intron Name: Anas_platyrhynchos_platyrhynchos_1_29790046_29793708_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29790046 - 29793708

Intron Length:

3663

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGTTC

5'SS Class:

strong_major

3'SS Sequence:

AATTTTTTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATATATTTAATC

Flanking Amino Acid:

SSASADLVVRGPPGPPGGIR

Intron Amino Acid Position:

591

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

30.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

83.1

0.74

0.8

81.3

35.4

Minor 5ss

41.3

-1

3.3

58.3

46.6

Minor BPS

65.3

0.46

1.4

70.61

34.3

Associated Gene:

Gene:

CNTN1

Ensembl Gene ID:

ENSAPLG00000010381

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017573

29654385 - 29831590

177206

ENSAPLT00000010916

29659547 - 29831590

172044

ENSAPLT00000045009

29587053 - 29831590

244538

ENSAPLT00000043731

29584749 - 29831590

246842