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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29800916_29803867_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29800916 - 29803867
Intron Length:
2952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TCTACAATAATC
Flanking Amino Acid:
SNRELTITWMPLSREYHYGN
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
80.3
0.68
0.8
78.2
30.6
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
49.9
-0
1.9
65.43
40

Associated Gene:

Gene:
CNTN1
Ensembl Gene ID:
ENSAPLG00000010381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045009
29587053 - 29831590
244538
ENSAPLT00000043731
29584749 - 29831590
246842
ENSAPLT00000017573
29654385 - 29831590
177206
ENSAPLT00000010916
29659547 - 29831590
172044