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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29818342_29831510_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29818342 - 29831510
Intron Length:
13169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
GTTCGATGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
AGTAAAATAACA
Flanking Amino Acid:
DGEVAQIKISGATAGVPTLL
Intron Amino Acid Position:
983

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
37.5
Major BPS
61.3
0.28
1
62
30.6
Major PPT
68.9
0.43
1.1
62
43.5
Minor 5ss
37.8
-1.4
3
47.1
48.3
Minor BPS
45.2
-0.3
2
59.52
38.8

Associated Gene:

Gene:
CNTN1
Ensembl Gene ID:
ENSAPLG00000010381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045009
29587053 - 29831590
244538
ENSAPLT00000043731
29584749 - 29831590
246842
ENSAPLT00000017573
29654385 - 29831590
177206
ENSAPLT00000010916
29659547 - 29831590
172044