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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29876879_29884200_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
29876879 - 29884200
Intron Length:
7322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGGTTA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATGATTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
73.8
32.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.6
0.87
0.6
89
20.1
Minor 5ss
37.3
-1.4
3.4
50.9
46.1
Minor BPS
64.5
0.45
1.6
73.39
38.3

Associated Gene:

Gene:
PDZRN4
Ensembl Gene ID:
ENSAPLG00000011265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042599
29876632 - 30122382
245751