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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29881294_29884200_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
29881294 - 29884200
Intron Length:
2907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAAAGAG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATGATTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
59.7
39.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.6
0.87
0.6
89
20.1
Minor 5ss
29.6
-2.3
3.4
38.5
46.6
Minor BPS
64.5
0.45
1.6
73.39
38.3

Associated Gene:

Gene:
PDZRN4
Ensembl Gene ID:
ENSAPLG00000011265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043658
29880624 - 30122382
241759