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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29884288_29888243_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
29884288 - 29888243
Intron Length:
3956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
TTGCCTGGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTTTTTGCAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
65.6
0.35
1
60.2
40.4
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
49.4
0.04
2.2
74.97
42.5

Associated Gene:

Gene:
PDZRN4
Ensembl Gene ID:
ENSAPLG00000011265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026920
29881431 - 30122382
240952
ENSAPLT00000043658
29880624 - 30122382
241759
ENSAPLT00000025893
29852101 - 30122382
270282
ENSAPLT00000042599
29876632 - 30122382
245751
ENSAPLT00000017774
29852101 - 30122382
270282
ENSAPLT00000037545
29868554 - 30122382
253829
ENSAPLT00000011727
29884201 - 30122382
238182
ENSAPLT00000033469
29881431 - 30122382
240952