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Intron Name: Anas_platyrhynchos_platyrhynchos_1_29888349_29895183_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

29888349 - 29895183

Intron Length:

6835

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TGGATCTCTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATAAT

U12 Branch Point Sequence:

AATTCTGTCATG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.7

23.7

Major BPS

66.4

0.41

1.1

66.3

36.5

Major PPT

72.3

0.5

62.5

44.2

Minor 5ss

32.8

-2

2.9

39.7

45.8

Minor BPS

44.6

-0.5

2.3

54.18

41.7

Associated Gene:

Gene:

PDZRN4

Ensembl Gene ID:

ENSAPLG00000011265

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011727

29884201 - 30122382

238182