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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_29888349_30079647_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29888349 - 30079647
Intron Length:
191299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAC
U12 Branch Point Sequence:
TTGTGCTTACTC
Flanking Amino Acid:
GLQIHDKIIEVNGKDLSKAT
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
66.4
0.41
1.1
57.4
41.4
Major PPT
77.1
0.61
1
75.9
38.3
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
55.4
0.15
2.1
69.56
42.8

Associated Gene:

Gene:
PDZRN4
Ensembl Gene ID:
ENSAPLG00000011265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026920
29881431 - 30122382
240952
ENSAPLT00000043658
29880624 - 30122382
241759
ENSAPLT00000025893
29852101 - 30122382
270282
ENSAPLT00000042599
29876632 - 30122382
245751
ENSAPLT00000017774
29852101 - 30122382
270282
ENSAPLT00000037545
29868554 - 30122382
253829
ENSAPLT00000033469
29881431 - 30122382
240952