About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2999284_3000215_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2999284 - 3000215
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGTGTTTTTACA
Flanking Amino Acid:
FSSSVILPVTAIFFVLLTHS
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
70.6
41.3
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
85.7
0.8
0.8
79.9
37.7
Minor 5ss
45.6
-0.5
2.9
64.4
47
Minor BPS
54.4
0.13
1.7
66.95
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004103
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036751
2989750 - 3013822
24073
ENSAPLT00000004217
2987842 - 3013822
25981
ENSAPLT00000004216
2999152 - 3013822
14671