Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3000264_3001958_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3000264 - 3001958

Intron Length:

1695

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATCAA

U12 Branch Point Sequence:

ACATCAAGAATT

Flanking Amino Acid:

DEWLSPVTEPGSAHPSFSSS

Intron Amino Acid Position:

197

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.8

88.6

27.1

Major BPS

62.4

0.31

32.1

Major PPT

84.7

0.78

0.7

80.7

24.5

Minor 5ss

42.7

-0.8

3.4

64.1

47.4

Minor BPS

45.6

-0.2

1.9

62.77

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004103

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004216

2999152 - 3013822

14671