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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3002607_3002829_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3002607 - 3002829
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTCTCTCACA
Flanking Amino Acid:
SWVYKEFECIDEKILFSNAP
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.2
28.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.7
0.78
0.7
79.7
25.9
Minor 5ss
29.1
-2.4
3.2
36.8
41.9
Minor BPS
54
0.12
2.1
71.45
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004103
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036751
2989750 - 3013822
24073
ENSAPLT00000004217
2987842 - 3013822
25981
ENSAPLT00000004216
2999152 - 3013822
14671