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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30079902_30081507_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30079902 - 30081507
Intron Length:
1606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCACATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATATACT
Flanking Amino Acid:
PDICPFLLSDSCHSLHPAEH
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
40.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
70.6
0.46
0.9
66.3
34.9
Minor 5ss
38.5
-1.3
3.4
55.3
48.9
Minor BPS
50.6
0.1
2.3
78.41
43.3

Associated Gene:

Gene:
PDZRN4
Ensembl Gene ID:
ENSAPLG00000011265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011727
29884201 - 30122382
238182
ENSAPLT00000033469
29881431 - 30122382
240952
ENSAPLT00000026920
29881431 - 30122382
240952
ENSAPLT00000043658
29880624 - 30122382
241759
ENSAPLT00000025893
29852101 - 30122382
270282
ENSAPLT00000042599
29876632 - 30122382
245751
ENSAPLT00000017774
29852101 - 30122382
270282
ENSAPLT00000037545
29868554 - 30122382
253829