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Intron Name: Anas_platyrhynchos_platyrhynchos_1_30081611_30105166_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30081611 - 30105166

Intron Length:

23556

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGACCA

5'SS Class:

strong_major

3'SS Sequence:

TGCTTTCTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCATCAT

U12 Branch Point Sequence:

AAGGCATCATGT

Flanking Amino Acid:

ADRTEDFEYEEVELCRISSQ

Intron Amino Acid Position:

127

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

74.4

Major BPS

57.9

0.2

1.4

44.2

Major PPT

81.5

0.71

0.8

77.2

31.6

Minor 5ss

32.2

-2

40.3

45.3

Minor BPS

-0.9

2.1

48.88

43.9

Associated Gene:

Gene:

PDZRN4

Ensembl Gene ID:

ENSAPLG00000011265

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011727

29884201 - 30122382

238182

ENSAPLT00000033469

29881431 - 30122382

240952

ENSAPLT00000043658

29880624 - 30122382

241759

ENSAPLT00000026920

29881431 - 30122382

240952

ENSAPLT00000025893

29852101 - 30122382

270282

ENSAPLT00000042599

29876632 - 30122382

245751

ENSAPLT00000017774

29852101 - 30122382

270282

ENSAPLT00000037545

29868554 - 30122382

253829