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Intron Name: Anas_platyrhynchos_platyrhynchos_1_30105266_30107305_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30105266 - 30107305

Intron Length:

2040

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAGATG

5'SS Class:

strong_major

3'SS Sequence:

TTGTCCTGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AATATTTTAATC

Flanking Amino Acid:

EEDTGIYVSEVDPNSIAARD

Intron Amino Acid Position:

160

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

75.8

39.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

77.9

0.63

0.9

73.2

37.1

Minor 5ss

35.2

-1.7

3.3

47.8

47.9

Minor BPS

63.5

0.4

1.2

66.09

33.2

Associated Gene:

Gene:

PDZRN4

Ensembl Gene ID:

ENSAPLG00000011265

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025893

29852101 - 30122382

270282

ENSAPLT00000043658

29880624 - 30122382

241759

ENSAPLT00000017774

29852101 - 30122382

270282

ENSAPLT00000042599

29876632 - 30122382

245751

ENSAPLT00000011727

29884201 - 30122382

238182

ENSAPLT00000037545

29868554 - 30122382

253829

ENSAPLT00000033469

29881431 - 30122382

240952