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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30105266_30110979_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30105266 - 30110979
Intron Length:
5714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GCCACTTTCATT
Flanking Amino Acid:
EEDTGIYVSEINGQDVQNRE
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.8
39.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.6
0.71
0.8
74
41
Minor 5ss
35.2
-1.7
3.3
47.8
47.9
Minor BPS
48.3
-0
1.8
60.44
44

Associated Gene:

Gene:
PDZRN4
Ensembl Gene ID:
ENSAPLG00000011265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026920
29881431 - 30122382
240952