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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30107369_30110979_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30107369 - 30110979
Intron Length:
3611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGAC
5'SS Class:
major
3'SS Sequence:
ATTTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GCCACTTTCATT
Flanking Amino Acid:
RIREGDRILQINGQDVQNRE
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
71.2
32.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.6
0.71
0.8
74
41
Minor 5ss
40.8
-1
3.1
51.8
39.7
Minor BPS
48.3
-0
1.8
60.44
44

Associated Gene:

Gene:
PDZRN4
Ensembl Gene ID:
ENSAPLG00000011265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025893
29852101 - 30122382
270282
ENSAPLT00000043658
29880624 - 30122382
241759
ENSAPLT00000017774
29852101 - 30122382
270282
ENSAPLT00000042599
29876632 - 30122382
245751
ENSAPLT00000011727
29884201 - 30122382
238182
ENSAPLT00000037545
29868554 - 30122382
253829
ENSAPLT00000033469
29881431 - 30122382
240952