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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30111082_30113894_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30111082 - 30113894
Intron Length:
2813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
GTATTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GCTGACATAATA
Flanking Amino Acid:
VLLVARPEMQLEEGWLDDER
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1.1
76.3
32.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
82.9
0.74
0.9
77.2
36.8
Minor 5ss
30.4
-2.2
3.3
39.1
46.1
Minor BPS
47.5
-0.1
1.9
57.88
41.7

Associated Gene:

Gene:
PDZRN4
Ensembl Gene ID:
ENSAPLG00000011265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026920
29881431 - 30122382
240952
ENSAPLT00000043658
29880624 - 30122382
241759
ENSAPLT00000025893
29852101 - 30122382
270282
ENSAPLT00000042599
29876632 - 30122382
245751
ENSAPLT00000017774
29852101 - 30122382
270282
ENSAPLT00000037545
29868554 - 30122382
253829
ENSAPLT00000011727
29884201 - 30122382
238182
ENSAPLT00000033469
29881431 - 30122382
240952