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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30114012_30120858_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30114012 - 30120858
Intron Length:
6847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACTG
5'SS Class:
major
3'SS Sequence:
CTCCTTTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TGTTTGATAATC
Flanking Amino Acid:
MQYTANEVEQPKKHEEEDGT
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.4
45.1
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
76.3
0.59
0.8
76.1
32.5
Minor 5ss
34.2
-1.8
3.5
46.9
48.4
Minor BPS
48.8
-0.1
2.2
67.43
38.4

Associated Gene:

Gene:
PDZRN4
Ensembl Gene ID:
ENSAPLG00000011265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025893
29852101 - 30122382
270282
ENSAPLT00000042599
29876632 - 30122382
245751
ENSAPLT00000017774
29852101 - 30122382
270282
ENSAPLT00000037545
29868554 - 30122382
253829
ENSAPLT00000011727
29884201 - 30122382
238182
ENSAPLT00000033469
29881431 - 30122382
240952
ENSAPLT00000026920
29881431 - 30122382
240952
ENSAPLT00000043658
29880624 - 30122382
241759