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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30226658_30234893_R

Intron Information:

Intron Rank:
153656
Intron Class:
major
Intron Phase:
Intron Coordinates:
30226658 - 30234893
Intron Length:
8236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCTTCGC
5'SS Class:
major
3'SS Sequence:
TTTTTAGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTTTTTAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.7
0.25
1.3
52.2
44.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.7
0.8
0.9
77.7
40.6
Minor 5ss
29.9
-2.3
2.8
37.5
39.5
Minor BPS
70.9
0.73
1.4
86.97
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030161
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019645
30226430 - 30256866
30437