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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30240679_30242645_F

Intron Information:

Intron Rank:
147622
Intron Class:
major
Intron Phase:
Intron Coordinates:
30240679 - 30242645
Intron Length:
1967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTTAG
5'SS Class:
major
3'SS Sequence:
TACTATTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTATCAGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
65.8
42.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
77.8
0.63
0.9
71.9
37.4
Minor 5ss
37.7
-1.4
3.1
39.9
46.1
Minor BPS
48.7
-0.1
1.8
67.5
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029473
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039966
30239852 - 30246393
6542