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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30279193_30280043_R

Intron Information:

Intron Rank:
155076
Intron Class:
major
Intron Phase:
Intron Coordinates:
30279193 - 30280043
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACATTT
5'SS Class:
strong_major
3'SS Sequence:
ATAATTTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CTGTGTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.1
81.6
33.2
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
67.9
0.4
0.9
62.2
39
Minor 5ss
49.4
-0
2.9
73.9
42.6
Minor BPS
48.4
-0
2
67.86
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030961
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032406
30273569 - 30280094
6526