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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30287132_30298679_R

Intron Information:

Intron Rank:
145283
Intron Class:
major
Intron Phase:
Intron Coordinates:
30287132 - 30298679
Intron Length:
11548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAGT
5'SS Class:
major
3'SS Sequence:
CTTCTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
71.3
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
83.3
0.75
0.8
77.5
29.5
Minor 5ss
28.7
-2.4
3.2
36.5
42.7
Minor BPS
54.8
0.23
2
81.65
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025562
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019486
30286508 - 30299207
12700