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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30304353_30305839_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30304353 - 30305839
Intron Length:
1487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTATCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GGTTTCTTATCT
Flanking Amino Acid:
FRAVYEAIKNYTFGDDLVHS
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.9
0.81
0.8
79.8
32.1
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
68.1
0.64
1.6
81.29
40.1

Associated Gene:

Gene:
GXYLT1
Ensembl Gene ID:
ENSAPLG00000004547
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004690
30302187 - 30332549
30363