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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30306013_30306325_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30306013 - 30306325
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTTTTTTGTACA
Flanking Amino Acid:
LLNIMFFHNPESLYVFPCQW
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
74
36.5
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
90.7
0.92
0.8
87.5
30
Minor 5ss
33.9
-1.8
2.9
42.4
44.3
Minor BPS
58.3
0.25
1.8
75.26
35.8

Associated Gene:

Gene:
GXYLT1
Ensembl Gene ID:
ENSAPLG00000004547
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004690
30302187 - 30332549
30363