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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_30312582_30313396_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30312582 - 30313396
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
CTTCCTCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
PCASQRLFLPLILKNVDSLL
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.3
0.7
0.7
75.6
26.5
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
GXYLT1
Ensembl Gene ID:
ENSAPLG00000004547
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004690
30302187 - 30332549
30363